ANTsPy
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ANTsX
Fast and comprehensive medical imaging analysis framework in Python
couple of potentially related issues here - pip ignores the wheel and installs the sdist for 0.3.3 - `setup.py install` fails similarly to #274 for 0.3.3 and 0.3.2 I did...
**Describe the bug** Hi, I have troubles in converting ANTsImage to PIL image. Please run this scripts and you can find that 'fixA2.png' is different to 'A.png' or 'fixA1.png'. It...
antspy 0.3.3, the latest as of time writing installed via PyPI cc #86
**Describe the bug** It is sometimes necessary to set an output directory for ants transforms other than `/tmp` due to space limitations. However, the `outprefix` option does not seem to...
hi i have code below in ANTs to convert to ANTspy code : ``` f = m = ${ANTSPATH}/antsRegistration -d 3 \ -r [$f, $m,1]\ -m MI[$f,$m,1,32] \ -t affine[...
**Describe the bug** Wildcard imports are widely agreed upon as a no-no in Python (see e.g. [here](https://docs.quantifiedcode.com/python-anti-patterns/maintainability/from_module_import_all_used.html?highlight=wildcard) or [here](https://internetworking.dev/why-it-is-bad-idea-to-use-wildcard-based-imports/)). They are particularly bad when placed inside an __init__.py file because...
Is it possible to install ANTsPy on top of an existing ANTs install without rebuilding all of the libraries? We have lots of existing ANTs installs (in containers, etc.) and...
**Describe the bug** A clear and concise description of what the bug is. **To Reproduce** Steps to reproduce the behavior: 1. Go to '...' 2. Click on '....' 3. Scroll...
I've noticed that: ``` aff = ants.registration(fix, mov, type_of_transform='Affine') # true aff['fwdtransforms'][0] == aff['invtransforms'][0] ``` Is this intentional? Affine transforms are easy to invert of course but this behavior seems...
**Describe the bug** `ants.motion_correction()` fails intermittently (over timepoints) on 2-photon imaging data with micron resolution when the resolution is correctly specified (either in microns or in millimeters). It works properly...