Alejandro Martinez

N argument missing when calling susieR::susie_rss()

20

Hi, I just looked at the wrapper to call susie_rss(). Even though you add **n** as an argument to **susie_args** list, , and this should be properly passed to the...

Maybe allow user to decide on how to adjust

2

https://github.com/neurogenomics/MAGMA_Celltyping/blob/8cb235fb495a467fb825819a76b2f154d3840146/R/calculate_celltype_associations.r#L136 Hi Brian, Please, read here from the MAGMA manual 

## 1. Bug description I cant specify I have my reference panel locally ### Code and console output ``` > pdrisk_genesout /home/rstudio/software/magma_software trying URL 'https://ctg.cncr.nl/software/MAGMA/ref_data/magma_software.zip' Error in utils::download.file(url = input_url,...

MAF cannot be inferred

3

I just got this running Note that: MAF is not inferred even though I am passing Freq col, and I am seeting maf to calculate ## Code ``` columnsnames =...