AAvalos82

seqGDS2SNP() altering genotype values for haploid data

1

Came across an issue where using seqGDS2SNP() on a "SeqVarGDSClass" object housing haploid variant calls that had been filtered. Effectively the process alters the genotypes, with the resulting "SNPGDSFileClass" object's...

Segmentation fault error in a subset of samples using LUMPY Express

13

Hi, I have been trying to use lumpyexpress on a set of 90 haploid genomes from honey bee drones. These genomes were aligned with BWA-MEM and did include the -M...