Julian Regalado Perez

I noticed the kseq implementations are different between the minimap2 repo and here. Which one should be used? I assume minimap2's kseq.h is the newer one based on git diff,...

Hi @lh3 I noticed a little problem when counting 32 mers. Given the sequence: > AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT ``` ./kc-c1 -k 32 seq.fa | head 1 0 2 1 3 0 4...

Hi again :) Quick question, the use of `hash64()` before inserting into any of the `h->h` tables done for ensuring an even distribution of kmers among the ensemble?

Can't build from source

3

Get the following compilation error when compiling ntHashIterator.hpp: Building on Fedora 36 gcc (GCC) 12.2.1 20221121 ``` g++ -DHAVE_CONFIG_H -I. -I./Common -I/home/jregalado/Software/ntCard -fopenmp -Wall -Wextra -Werror -O3 -MT ntcard-ntcard.o -MD...

Any reason not to accept ambiguous bases?

7

Kind of annoying having to remove them in order for AR to work.