John Kruper
John Kruper
@mattcieslak you should be able to see in the diffs where I can get the path to the visualization, not sure how to move it to reportlets dir yet.
Now also addresses #434
@smeisler current thinking is there's a bug in how pyAFQ imports qsiprep mapping, quickest fix is to tell pyAFQ to make its own mapping using SyN. you can use this...
Do you have the output that pyAFQ prints to the command line?
@smeisler would it be possible to share the derivatives of the original run through qsiprep ? For the run when you are using pyAFQ directly, make sure you are pointing...
@smeisler just to keep you updated, I downloaded the data and tried a variety of tractography and mapping methods on it. I think everything works fine except none of them...
pyAFQ may be more sensitive to this issue than other pipelines. @mattcieslak is there a way to validate that this is not an issue, for example by looking at the...
I am free tomorrow before 10 am PST, between 11:45 and 12:45 PST, and after 6:30 pm PST
There is a self-contained html file we generate called: ```{prefix_depending_on_dwi_file}_space-RASMM_model-DTI_desc-det-AFQ_viz.html``` It could be identified with the suffix viz and extension html. Also pyAFQ can directly return a path to this....
I believe I figured out a way to do this, see the linked PR. Still interested in any comments about the 3 transforms (ie, I am still not sure what...