Gregory Obermiller

Can EDTA produce the non-redundant and matched gfffile of genome.mod.EDTA.TElib.fa?

3

Hi, Mr. Ou I used following command: perl EDTA.pl --genome HFTH1.all.chr.fa --sensitive 1 --evaluate 1 -t 10 Then I got HFTH1.all.chr.fa.mod.EDTA.TElib.fa, HFTH1.all.chr.fa.mod.EDTA.intact.gff3 and other files. In order to get the...

ModuleNotFoundError: No module named 'RunCmdsMP'

2

Hi, rengang TEsorter is very cool!!!but I have a problem: I use `conda install -c bioconda tesorter` to install TEsorter in my linux server, I installed it successfully. The output...

Can TEsorter classify Class II elements(DNA transposons) into clade-level?

2

Hi @zhangrengang As the title, my TEsorter version is 1.4.6, I use TEsorter to classify my EDTA's outcome(my interested species is an apple species). my code: `TEsorter Gala_genome.fa.mod.EDTA.intact.fa -db rexdb-plant...