2061574124

exit code -6

2

i have around 60 samples, that performed paired-end seq for metagenome, total ~400G clean data. i have combine all forward reads and reverse reads, gained F.fastq,gz and R.fastq.gz. and than...

paired-end diamond with local database

1

With metagenome paired-end sequencing data, when I combined paired read1 and pared read2 into one read using flash2 or pandaseq, found that many pairs were not paired, that is, there...

error of step3

7

**run code just following: virsorter run -w out -i /home/dell/database/H1_assembly.contigs.fa --min-length 1000 -j 16 all** [2024-06-20 00:55 INFO] VirSorter 2.2.3 [2024-06-20 00:55 INFO] /home/dell/miniconda3/envs/vs2/bin/virsorter run -w out -i /home/dell/database/H1_assembly.contigs.fa --min-length...

/home/dell/bioinfo/FLASH2/flash2 -M 300 --min-overlap 10 --max-mismatch-density 0.25 /home/dell/bioinfo/FLASH2/C73.RemoveHost_1.fastp.fastq /home/dell/bioinfo/FLASH2/C73.RemoveHost_2.fastp.fastq [FLASH] Starting FLASH v2.2.00 [FLASH] Fast Length Adjustment of SHort reads [FLASH] [FLASH] Input files: [FLASH] /home/dell/bioinfo/FLASH2/C73.RemoveHost_1.fastp.fastq [FLASH] /home/dell/bioinfo/FLASH2/C73.RemoveHost_2.fastp.fastq [FLASH] [FLASH]...