17863952296

when I the run the braker, the problem was encountered. The input: braker.pl --cores=16 --species=Cyclidium --genome=Cy_Canu.filter.fasta --bam=all.bam Cy_hisat2.sort.bam The output: # WARNING: Number of reliable training genes is low (560)....

The lateset version of braker2 is installed. but still find "core.XXX" file in the outputfile after running it.

4

many errors like the following: /apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/aug_hints_316: line 3: 12402 Segmentation fault (core dumped) /usr/local/augustus/config/../bin/augustus --species=Cyclidium --AUGUSTUS_CONFIG_PATH=/usr/local/augustus/config --extrinsicCfgFile=/usr/local/braker/scripts/cfg/rnaseq.cfg --alternatives-from-evidence=true --UTR=off --exonnames=on --codingseq=on --allow_hinted_splicesites=gcag,atac --hintsfile=/apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/augustus_tmp/307.001.tig00002306_pilon_pilon_pilon.fa.1..251029.hints --predictionStart=1 --predictionEnd=251029 /apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/genome_split/tig00002306_pilon_pilon_pilon.fa --outfile=/apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/augustus_tmp/307.001.tig00002306_pilon_pilon_pilon.fa.1..251029.gff --errfile=/apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/augustus_tmp/307.001.tig00002306_pilon_pilon_pilon.fa.1..251029.err /apps/users/class00/dzg/Cyclidium/RNAseq/Braker2/braker/aug_hints_307: line...

Hi, I try many different parameter K while using SOAPdenovo to assemble Streptomyces spp. genomes( 7-10M), but good results were still not got. The size of the genome in the...