Elina Thibeau Sutre

deduce the time since baseline from dates and do not use the tag as it may not be the same in other BIDS data sets.

This feature would be also more useful if the activation of the auto-completion was done automatically during the installation: ``` activate-global-python-argcomplete --user # Only the first time you activate the...

Perform all the checks done in `clinicadl train` in the MapsManager.

I just realized that maybe this issue does not exist anymore in Clinica 0.7, as I am launching everything with Clinica 0.6 (cf https://github.com/aramis-lab/clinica/issues/707)

It is not possible to concat a DataFrame with single index with a multi-indexed DataFrame. And I was trying to concat `ses_df` (indexed by (participant_id, session_id)) with the content associated...

also as `merge-tsv` do not write the numbered index when using a BIDS only, I removed it when a CAPS must also be merged (this is why the test is...

Hi, You can find the working directory used by freesurfer by reading the line that describes recon-all launch in `clinica.log`: ``` recon-all -all -i /media/limpid/T7/ADNI-t1-freesurfer_test/BIDS/LMCI_4654/BIDS/sub-ADNI002S4654/ses-M60/anat/sub-ADNI002S4654_ses-M60_T1w.nii.gz -qcache -cw256 -subjid sub-ADNI002S4654_ses-M60 -sd...

That's true ! I will try to think of something else (and test it ^^)

I used the images from [ADNI dataset](http://adni.loni.usc.edu/) that are freely available but cannot be distributed publicly. The dataset was then preprocessed using the [open software clinica](http://www.clinica.run/). First the images are...