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123jjhy
Hi， table 0 seems to be invalid, I would like to ask you how to use it. MSG: Your version of bioperl do not handle codon table 0 It uses...
Hi， I've replaced the lib of /usr/local/lib/perl5/site_perl/ with https://github.com/bioperl/bioperl-live/tree/master/lib，but I still couldn't call the option of --table 0. there is still a WARNING: MSG: Your version of bioperl do not...
- Version: v1.4.0 ------------------ 原始邮件 ------------------ 发件人: "NBISweden/AGAT" ***@***.***>; 发送时间: 2024年6月27日(星期四) 凌晨0:57 ***@***.***>; ***@***.******@***.***>; 主题: Re: [NBISweden/AGAT] agat_sp_fix_longest_ORF.pl default codon table (Issue #420) What AGAT version do you use? — Reply to this email...
It is working now. Thank you for your patience!
hi， I have the same problem and need your help GFF3 file parsed Fasta file parsed Can't modify non-lvalue subroutine call of &Bio::SeqFeature::Generic::end at ./agat_sp_fix_longest_ORF.pl line 487.
It should be a problem of the GTF file, could be about SuspiciousFrame
@tanghaibao Thank you for your reply. What I want is that if it is not a gene pair, it is only displayed where it is present, for example, make-CHR6-snap-gene-14.25-mrNA-1, which...
Ok, I'm thinking about it based on what you said. I used the following two lines of command cat maker_Chr6.bed s7_117_Chr6.bed > maker_s7_Chr6.bed python -m jcvi.graphics.synteny target.blocks maker_s7_Chr6.bed blocks.layout6 make-CHR6-snap-gene-14.25-mrNA-1...