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                                            123Barry

How to Generate Embeddings of protein sequences using ESM C

hiii @lhallee can i use esm3 encoder to embed protein structures without sequences? (i wanna use just structure track of encoder) do you think is it possible? thanks! :)

How to Generate Embeddings of protein sequences using ESM C

> Hey [@123Barry](https://github.com/123Barry), I believe ESM3 accepts full structures (after tokenization with the ESM3 VQ-VAE) or direct secondary structure tokens. Perhaps this [example notebook](https://github.com/evolutionaryscale/esm/blob/main/cookbook/tutorials/4_forge_generate.ipynb) is helpful. You may also find...

Can ESMC extract embeddings using the structure track?

i wanna ask the same question! I want to embed my generated proteins structures but i do not have sequences. Is it possible to use the encoder of esm3 to...