loupeR

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Error in creating Loupe file: Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double)

1

Hi 10x Team, First off, thank you for creating the LoupeR function to make working with Seurat + Loupe easier! Unfortunately, I keep getting the same error: **"Error in .make_numeric_version(x,...

rln0005

When using Visium data, after format conversion, the image is lost. Can you provide a method to retain the image?

txizzy

Creating Loupe file from Seurat fails in R 4.4.0

2

The function create_loupe_from_seurat() fails in R 4.4.0 (working fine in previous versions) when referencing .make_numeric_version with the following error: extracting matrix, clusters, and projections Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) :...

astark4

Hi, I have a seurat object where I have calculated cell cycle scores for each cell, but when I convert it to a cloupe object I lose it as well...

brigidar

HDF5 error after joining multi-layer seurat object

1

I combined my multi-layer seurat object as recommended, but when I try to export it I still get an issue at the hdf5r step. I have hdf5 installed and the...

brigidar

Expression Distribution (Violin plots) remains empty

1

Hi, Thanks for making this tool available - most parts work on first attempt ;-) However, the 'Expression Distribution' panel remains empty. Only horizontal gridlines and y-axis labels are visible,...

kloot

Feature request: Import cluster colors

1

May I nominate this feature - ideally via a vector or list of hex values external to Seurat, solely to avoid Seurat's choice of not-so-easy-to distinguish colors. Thanks in advance!

kloot

Creat Loupe file for Visium HD data

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Hi, thank you for developing the tool! I am trying to create a Loupe file from a Seurat object of Visium HD data. However, I got an error "Barcodes should...

LI-Yan-Ming

Formatting errors

2

Hello! I'm trying to take a Seurat object made up of 15 samples and explore it in Loupe after I processed, filtered and integrated it in R. Upon running create_loupe()...

joebielanski

loupeR in a Docker/Singularity container

1

Dear 10X team, I was wondering whether it would even be legal to include `loupeR` into a Docker container to run a Nextflow pipeline and output the Cloupe file (from...

SergejN