xenium topic

Bayesian Segmentation of Spatial Transcriptomics Data

kharchenkolab

A Julia package for single cell and spatial data analysis

HaojiaWu

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imagin...

EliHei2

R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients

MargoKapustina

Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"

10XGenomics

nf-core