snakemake topic
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
docs
Documentation of the Snakemake-Workflows project
V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows