snakemake topic
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
pyflow-ChIPseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house
pyflow-ATACseq
ATAC-seq snakemake pipeline
tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake
pytest-workflow
Configure workflow/pipeline tests using yaml files.
varCA
Use an ensemble of variant callers to call variants from ATAC-seq data
smsk
Snakemake skeleton - Build workflows with Snakemake
snakemake-mode
[MIRROR] Emacs support for Snakemake