phylogenetic-trees topic

List phylogenetic-trees repositories

graphlan

84
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28
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High-quality circular representations of taxonomic and phylogenetic trees

TreeDist

28
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6
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Calculate distances between phylogenetic trees in R

genesis

56
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12
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A library for working with phylogenetic and population genetic data.

pyCirclize

642
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36
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Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

BuscoOrthoPhylo

19
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4
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Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

CafePlotter

20
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3
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A tool for plotting CAFE5 gene family expansion/contraction result

r_phylogenetics_worshop

44
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9
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Using ggtree to build phylogenetic trees

TreeTools

15
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7
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Create, modify and analyse phylogenetic trees in R

diff-evol-tree-search

20
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2
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We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original representation itself, thus requiring no prior training data.

phyTreeViz

29
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0
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Simple phylogenetic tree visualization python package for phylogenetic analysis