high-throughput-sequencing topic
hts-nim
nim wrapper for htslib for parsing genomics data files
GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
varsim
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
BioAlignments.jl
Sequence alignment tools
smashpp
Find and visualize rearrangements in DNA sequences
fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
genoiser
use the noise
bigwig-nim
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
vSNP
vSNP -- validate SNPs
Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data