cytometry topic
FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
FlowIO
A Python library for reading and writing Flow Cytometry Standard (FCS) files
CytoPy
A data-centric flow/mass cytometry automated analysis framework
EmbedSOM
Fast embedding ot multidimensional datasets, great for cytometry data
imcyto
Image Mass Cytometry analysis pipeline
GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
scyan
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
tidytof
An R package for analyzing high-dimensional cytometry data using the tidyverse.
tidyomics
Easily install and load packages from the tidyomcis ecosystem
Chronoclust
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.