bioimage-analysis topic

QuPath - Bioimage analysis & digital pathology

qupath

AI-based pathology predicts origins for cancers of unknown primary - Nature

mahmoodlab

This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.

RMS-DAIM

C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.

arttumiettinen

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

hallvaaw

A deep-learning pipeline for segmentation of ambiguous microscopic images.

matjesg

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

mahmoodlab

Fiji plugin for object(s) detection using template(s) matching

multi-template-matching

StarDist - Object Detection with Star-convex Shapes

stardist

Fast reconstruction of spatial networks from bioimages.

VeraPancaldiLab