sunshx-bioinfo

Results 8 comments of sunshx-bioinfo

Hi, i tried it, but it didn't work. ---- Replied Message ---- | From | ***@***.***> | | Date | 01/22/2025 18:05 | | To | ***@***.***> | | Cc...

Hi,there isn't 'pixel' in my 'coordinate systems', it's 'pixels' : ![Image](https://github.com/user-attachments/assets/298d744d-4046-4e10-90c7-19169128033c) ![Image](https://github.com/user-attachments/assets/e1c5c8d2-02bb-42d3-a677-1bdca7e2fdfe) so i passed `coordinate_systems=='pixels'` and `coordinate_systems==['pixels']` to `pl.show()`, but both of them didn't work, the error is same...

Hi, sorry for late reply. I want to use `object classification` function in QuPah to train an object classifier for each protein, because it's difficult to give a cutoff for...

I will be very happy to see such function is avaiable in Sopa! Acturally, I plan to use Sopa as my first-choice software to analysis my spatial data and have...

Thanks! For cell properties, i want to know cell/nucleus's area, perimeter, circularity, solidity, min/max diameter and so on. For `object classification` function in QuPah, it enables us to train a...

Hi, Both of two methods work! Thanks!

Hi,@quentinblampey, Do you add `object classification` function or other similar function in Sopa? I'm looking forward to it. :)

Thanks for your reply. I'm very happy to see a new version of Sopa and I'll try it.