scvi-tools
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Deep probabilistic analysis of single-cell and spatial omics data
related to https://github.com/scverse/scvi-tools/issues/1510 Allows to do this `set_activation = dict(activation_fn=torch.nn.Softplus)` `vae = scvi.model.SCVI(adata, encoder_kwargs=set_activation, decoder_kwargs=set_activation)`
This is actually pretty straightforward, though we definitely can add components to make this more reproducible and developer friendly
Is there a way to pass an activation function class to SCVI? I don't see it in the arguments. I am trying to use differential geometry to analyze the manifold...
It should be relatively straightforward to create a new autotune module with [Ray tune](https://docs.ray.io/en/master/tune/tutorials/tune-pytorch-lightning.html).
The idea is that we want to run our unit tests (pytests), and probably more end-to-end tests as well as performance benchmarks on GPU's for our releases instead of just...
scVI used to have a within cluster DE test that I used often, but I no longer see this functionality in scvi-tools. Is it possible to add it back? This...
I would like to contribute an [OpenVINO](https://docs.openvino.ai/latest/index.html) backend (allows to speed up the runtime of pretrained models) for the models in this repository. Now I have a script, which converts...
