Raza

I am having the same issue. Were you able to resolve it? Thanks

Thanks for replying. I was using conda installation of hicup where everything was working fine except the hicup2homer. I wasn't specifying the script location but using conda path location automatically....

Thanks, I already ran the demo data and everything worked fine. For splitting by chromosome, can I just specify a single chromosome in the chromosome list parameter and then run...

Thanks, I am now doing it in parallel after splitting by chromosome. It seems the bottleneck is in the duplicate removal step as increasing the resolution doesn't speed up the...

Hi, I am getting this error when running step6 on some of my chromosomes: Traceback (most recent call last): File "/scratch/mHiC/s6_em.py", line 88, in main(priorPath, multiFilePath, multiKeysPath, uniFilePath, outFilePath, threshold)...