Alan R Lowe

[WIP] Add features to Bayesian updates

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Closes #108

Fully utilise appearance features during Bayesian updates

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+ [x] Allow objects to have features + [x] Split Bayesian updates during track linking, to allow motion and feature based updates + [x] Provide option to track using motion,...

Add How-To guide for configuration

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Add some How-To guides around configuration of btrack, using guidance from: https://diataxis.fr/ Related: #124 #125 #111 #85 #31

Add citation

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Closes #170

`track_interactive` will be replaced by `track` in v0.5. We need to raise a deprecation warning ahead of making that big change as it will probably break a lot of peoples...

https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-citation-files

We could set an environment variable at the top, and use it elsewhere https://docs.github.com/en/actions/learn-github-actions/environment-variables ``` env: python_version: "3.9" ``` _Originally posted by @paddyroddy in https://github.com/quantumjot/BayesianTracker/pull/161#discussion_r904877202_

One common error in configuration is to swap axes with data (e.g. x & y) leading to incorrect tracking. When setting the volume, or adding objects, we should raise a...

side-note: since you're packing data files here, you might like to add https://pypi.org/project/check-manifest/ to your CI. Can look something like this: ```yaml check-manifest: name: Check Manifest runs-on: ubuntu-latest steps: -...

Currently, to load data from an h5 file to napari you would need to do the following: ```python with btrack.dataio.HDF5FileHandler("file.h5", "r") as hdf: tracks = hdf.tracks data, properties, graph =...