pymc

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Abstract Graph Iteration

15

## Description Pulled any graph related information into two methods: 1. `create_plates`: Get plate meta information and the nodes that are associated with each plate 2. `edges`: Edges between nodes...

williambdean

Implement unconstraining transform for LKJCorr

20

I've ported [this bijector](https://github.com/tensorflow/probability/blob/94f592af363e13391858b48f785eb4c250912904/tensorflow_probability/python/bijectors/correlation_cholesky.py#L194) from `tensorflow` and added to `LKJCorr`. This ensures that initial samples drawn from `LKJCorr` are positive definite, which fixes #7101 . Sampling now completes successfully with...

johncant

First time congratulatory message images are huge

8

### Description https://raw.githubusercontent.com/pymc-devs/brand/main/welcome-bot/BannerCongratulations.jpg https://raw.githubusercontent.com/pymc-devs/brand/main/welcome-bot/BannerThanks.jpg I don't think we need 3634*1930 pixels to say congrats

ricardoV94

BUG: Setting None coord is problematic

9

### Describe the issue: When setting a coord None. Something goes broken in pymc 5.0.2. ### Reproduceable code example: ```python # This is good import pymc as pm import numpy...

ferrine

Implement specialized MvNormal density based on precision matrix

5

## Description This PR is exploring a specialized logp for a MvNormal (and possible MvStudentT) parametrized directly in terms of tau. According to common model implementation looks like: ```python import...

ricardoV94

debug rtd build

2

PR with tests to try and debug rtd issues where it seems the repo isn't being properly checked out. NOT TO BE MERGED ## Description ## Related Issue - [...

OriolAbril

RTD is broken

3

### Description ``` Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/pymc/conda/7383/lib/python3.11/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution executenb( File "/home/docs/checkouts/readthedocs.org/user_builds/pymc/conda/7383/lib/python3.11/site-packages/nbclient/client.py", line 1314, in execute return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/pymc/conda/7383/lib/python3.11/site-packages/jupyter_core/utils/__init__.py", line...

twiecki

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.4.0 to 6.1.0. Release notes Sourced from docker/build-push-action's releases. v6.1.0 Bump @​docker/actions-toolkit from 0.26.2 to 0.27.0 in docker/build-push-action#1149 Full Changelog: https://github.com/docker/build-push-action/compare/v6.0.2...v6.1.0 v6.0.2 Bump @​docker/actions-toolkit from 0.26.1 to...

dependabot[bot]

ENH: Customizable plate labels

11

### Before ```python # Currently would have to create graphviz instance graph = pm.model_to_graphviz(model) # Save output to .dot file and manually modify subgraph labels print(graph) # Resave as pdf...

williambdean

Move tools and build system to pyproject.toml

2

## Description ## Related Issue - [ ] Closes # - [ ] Related to # ## Checklist - [x] Checked that [the pre-commit linting/style checks pass](https://docs.pymc.io/en/latest/contributing/python_style.html) - [ ]...

Armavica