Peter Sobolewski

I believe this should be resolved via this set of PRs upstream: https://github.com/napari/napari/pull/5698 https://github.com/napari/napari/pull/5739 https://github.com/napari/npe2/pull/276

This is still not working: `napari https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001247.zarr` ome-zarr: 0.9.0 napari: 0.5.0 napari-ome-zarr: 0.6.1 ``` ╰─ napari https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001247.zarr(napari-050) ─╯ Traceback (most recent call last): File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-050/lib/python3.12/site-packages/napari/_qt/qt_viewer.py", line 986, in _qt_open self.viewer.open(...

The layer list contextual menus work just for for me as well. Even the `Convert...` which surprised me. I'd vote to close.

As a user, this is a really solid and respectful proposal. I can see how it benefits you—and it could benefit napari and napari devs in general—but you've clearly given...

What's really wierd is that `stardist` installs fine and doesn't do the `numpy` shenanigans. edit: The difference is `stardist` doesn't depend on `tensorflow` directly in requirements, so i guess pip...

Yes, in both cases I've got TF installed first, when setting up the environment following Apple instructions. And because I neglected to mention, this is a branch of cellfinder that...

Good news! Apple has bumped the tensorflow-deps conda package and now it has numpy 1.21 etc. With ``` 'tensorflow; platform_system!="Darwin" or platform_machine!="arm64"', 'tensorflow-macos; platform_system=="Darwin" and platform_machine=="arm64"', ``` in setup.py the...

Experimental numba M1 releases work with numpy 1.21.* StarDist installs fine in the apple TF-metal conda miniforge env. See: https://numba.discourse.group/t/wheels-for-apple-silicon-m1/1282?u=psobolewskiphd

FYI: numba 0.55.2 has been released, along with llvmlite 0.38.1 which both support numpy 1.22 *and* have arm64 macOS wheels on pypi. So at least on macOS and M1 this...

I think the option of using a wider line (so a line that has pixels (just a few) in the transverse direction, relative to length) and then, for example, averaging...