petermr

thank you = go ahead with the rest On Tue, Nov 12, 2019 at 12:57 PM Ambarish Kumar wrote: > Sir, suggest for any changes. > EO composition extraction and...

# design for reporting Retrieval/Extraction in tables. ## Gold standard This is a human-created list of tables and columns which ideally should be retrieved precisely by the software ## `ami-table`...

# analysis table For analysing the retrieved/extracted tables we need to following column headings: * **PMCID** * **raw table number** (e.g. `Table 1`) * **raw filename** (e.g. `table_1.xml`) * **raw...

I am adjusting the parameters to extract tables and columns. Here is the current output which you can use to select true and false positives. Please add a new column...

# matches 20191121 ``` AMITableTool cTree: PMC4391421 table: Chemical composition of thyme EO column: compound => Constituents*; 64.7 column: percentage => Area % of total; 100.0 AMITableTool cTree: PMC5080681 table:...

NO There should be a single column `matches20191121` which records whether a table has been extracted (NOT what the columns are). You should be able to add it after `extracted_subtable_name`

# check extracted compounds against current compounds dictionary Have extracted compound names from "most" of the relevant tables in `oil186` . This gives a multiset of names/frequencies in https://github.com/petermr/CEVOpen/blob/master/searches/oil186/__tables/compound_multiset.txt This...

Example: PMC 5080681 (ALWAYS include "PMC") Location: Methods >> Collecting and preparing plant materials Palestine "Location" ONLY applies to where the material was collected, NOT where the equipment comes from

Thanks I will do that early morning UK time. I have talked to @mannyrules and he will find the information useful. I now have the code to section the paper...

Please add PMCIDs to the first field of all non-empty rows in the table. On Fri, Oct 25, 2019 at 9:06 AM Ambarish Kumar wrote: > Sir, please check for...