pylidc

pylidc copied to clipboard

Showing patients with multiple nodules

9

Hi, I had a question about how to go through a patient with multiple nodules. For example, I can see the first nodule of patient #1 and each annotation mask/slice...

jasonjin1

If a user specifies a non-existent DICOM path in the pylidc config file, an error message is shown. This error message would be more helpful if it included the DICOM...

notmatthancock

Contrast agent ambiguity

4

Hi, I noticed the following metadata in `LIDC-IDRI-0132/1.3.6.1.4.1.14519.5.2.1.6279.6001.218658642102832118810712329678/1.3.6.1.4.1.14519.5.2.1.6279.6001.151647338241909635299641922057/000000.dcm`: ``` [0040,0275] RequestAttributesSequence SQ 94 [fffe,e000] Item na 78 [0040,0007] ScheduledProcedureStepDescription CT, CHEST, W CONTRAST LO 22 ``` It's writtent `W CONTRAST`...

Jonas1312

Hi, I am working on this library from Google Colab. I know how to add a path from Google Colab. But where do I have to mention the respective path...

aislam388

sqlite database path

1

Hi! Thanks for this library -- it has been very useful!! I was wondering if it is possible to change the path where the sqlite database is stored. In the...

nanddalal

Interactive Scan visualization does not work

15

Following the instructions and example here: https://pylidc.github.io/tuts/scan.html#scan-visualization, the result is a static image, not interactive visualization. See demo of the actual behavior here: https://www.screencast.com/t/kSNVqyRP1Rt

fedorov

parameterize populate.py script and fix pydicom import

7

Instead of using hard-coded paths locations, reuse those from settings. While doing that, added XML annotations location to the configuration. It might make sense to move the getSettings() function to...

fedorov

DeprecationWarning: Please use `distance_transform_edt` from the `scipy.ndimage` namespace, the `scipy.ndimage.morphology` namespace is deprecated. Seen on scipy==1.8.1

beaslera

centroid to physical coordinates

1

Hi, I am doing lung nodule predictions on the LIDC-IDRI-0069 sample, and I got the center and the size of the nodule detection to be "center": [-59.54512023925781, 84.96267700195313, 1369.8218994140625], "orientation":...

longchingkwok331

added ClusterError exception.

1

That way programmer can catch the error and see which CT scan must be manually reviewed.

kyriakstrat