Paul Hoffman

Results 41 comments of Paul Hoffman

Have you tried naming the colors based off their cluster label? Example: ```R colors

Hi @Rahul1711arora, I don't believe you can use `readline` to provide input directly into a function like that. Instead, if this is a script, I would recommend running `readline` first...

Hi Max, First, we apologise for the `avg_logFC`/`avg_log2FC` confusion. We tried to make this change clear during the Seurat v4 beta and before the v4 release, but will try to...

This looks good to me from a Seurat perspective; thanks Sam!

Hi Gilad, Sorry for the delay. While we do not cannot support for anyone using SeuratData on alternative data repositories (not provided by us), we are working on a guide...

Can you try updating to the latest version of Seurat and uwot and to R v4? An error with `read.dcf` seems like a problem with package versions

Hi Markus, Thanks for reporting. This is a bug in `SpatialPlot` as it should support `coord_flip`

Hi Pat, thanks for starting this! I'll try to respond to your questions as best as I can - loading speed: `data.table::fread` is the fastest out of the three and...

Can you try the `develop` branch?