napari-lazy-openslide
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manzt
Lazily load multiscale whole-slide images with openslide and dask
I am a Ph.D. student at the University of Washington, and my lab is using light-sheet microscopy to gather 3D datasets of cancerous biopsies. We present the false-colored 3D dataset...
This PR makes the OpenSlideStore objects seriazable, so that they can be used in a Dask cluster. Serialization is implemented in __setstate__ and __getstate__. At this moment, this code: ```...
https://github.com/manzt/simple-zarr-server/issues/5
Thanks for creating this! This PR is to add `getitems` method to the SVS store for compatibility with zarr > 2.14. Zarr PR that broke (https://github.com/manzt/napari-lazy-openslide/issues/18) the current store: https://github.com/zarr-developers/zarr-python/pull/1131
Was hoping someone could quickly chime in with any thoughts on where to look. very simple code, basically load a WSI with the OpenSlideStore and pull one of the pyramids...
