lzhangUT

Hi @althonos , Thanks for your response. first of all, I think LuxC.faa is a fasta file, i.e.,a sequence file, not a multiple alignment file here. second, I was following...

Hi Dr. Barrick, Thank you very much for your quick reply. Basically yes. But more specifically, I have an annotated file (in gene bank format), which is a designed plasmid...

Hi Dr. Barrick, Thanks for your information. Now by creating my own consensus sequence file and aligning it with my template plasmid sequence (which has annotation), I can get a...

Dr. Barrick, I actually found the functions in bokeh_plot for visualization. When I was running the code in notebook (line by line, or by function), it seems like everything works...