lzhangUT

Hi Any updates on you run? I am downloading the data from AlphaFold GitHub, it is taking so long….    From: zhoujingyu13687306871Sent: Thursday, July 21, 2022 5:30 PMTo: hpcaitech/FastFoldCc: lzhangUT; CommentSubject:...

this is what I get, along with my cuda version. Thanks for your help. 

and also cuda diver verson: 

The same issue/error occurs, after I install localcolabfold. anything with the minimization.py?

But while I was doing colabfold_batch msas predictions command, I checked my GPU usage, it seems like it was fully used at that time. If CUDA is the issue, the...

It is like this while running colabfold_batch    From: Milot MirditaSent: Tuesday, July 26, 2022 11:21 PMTo: sokrypton/ColabFoldCc: lzhangUT; AuthorSubject: Re: [sokrypton/ColabFold] Couldn't use amber in colabfold_batch, after running colabfold_search (Issue...

Okay, thank you very much for your quick reply. You mentioned ‘ I would recommend to stop the gpu minimization parameter for now.’ how do I implement that in the...

@lucidrains @EnzoAndree @milot-mirdita it will be greatly appreciated!

same issue here. use the same script as you outlined in the readme. tge query seuqence is just a regular 237 aa sequence ython3 scripts/precompute_alignments_mmseqs.py /fasta_dir/query_seqs.fasta \ data/mmseqs_dbs \ uniref30_2103_db...

however, if I manually copy all the content and create the file and save into my working directory, the files seem to be working, the error was gone. but I...