Lily Wang

BUG: streamlines only returns the dx_array, dy_array of last frame

5

## Expected behavior ## From a skim over the docs and code my impression was that `streamlines.generate_streamlines` would incorporate all frames between `start_frame` and `end_frame` in the dx_array, but looking...

Fast cythonized inverse array of unsorted, unique indices

7

## Is your feature request related to a problem? ## PR #3368 creates an inverse index array of unsorted indices with this Python loop: ```python mask = np.zeros_like(self.ix) for i,...

Cannot run `nonbonded` setup scripts

1

I do not have the credentials for the Heroku app. I'm admittedly confused why it is necessary to upload data to the app (edit: i.e. if it is record-keeping only...

Update guessing docs

2

When https://github.com/MDAnalysis/mdanalysis/pull/3753 is merged we'll need to update the guessing tutorials here.

Update user guide contributing docs

4

Related to #327 This PR removes some old section and adds some information on which files are Jupyter notebooks and which are not. ---- :books: Documentation preview :books:: https://mdanalysisuserguide--330.org.readthedocs.build/en/330/

Recommend mamba over conda

8

The user guide recommends conda -- I haven't been keeping up with its development but mamba still really seems the way to go instead.

**User story** As a *non-expert contributor*, I want to *embed links to other documents*, and I don't know how. **Additional context**

**User story** As a *person who wants to contribute to the user guide*, I want to *know where to find files to edit*, so that *I can contribute material*. **Additional...

Units user story

1

**User story** As an *infrequent user of MDAnalysis*, I want to *easily know what the units of MDAnalysis are*, so that *I don't accidentally mix up units in my analyses*....

Link to notes like https://github.com/MDAnalysis/mdanalysis-sphinx-theme/issues/26