Kyle Beauchamp

Yes, but sometimes people still need to manually access the AMBER files. For example, Gaff2XML needs gaff.dat On Wed, May 21, 2014 at 11:36 AM, John Chodera [email protected]: > I...

Yes, that's what I was thinking: use the path relative to antechamber. On Wed, May 21, 2014 at 11:45 AM, Jason Swails [email protected]: > Yes, but sometimes people still need...

Thanks, I'll will investigate this. On Wed, May 21, 2014 at 11:51 AM, Jason Swails [email protected]: > Actually, I think parmchk2 might still rely on AMBERHOME... If you can >...

I wonder if @lh3 would be interested if the build system, packaging, and API were consistent with mappy.

All sgtm. My only idea was a "standard" set of functions and classes for I'll interoperability. On Mon, Apr 2, 2018, 6:43 AM Heng Li wrote: > My understanding is...

Anyone have any updates on this? I'd love to use the UNITE DB; I saw it used in this paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8565518/

Or are there any known downloadable UNITE-based kraken2 databases online?

I have repeated the test with several threading settings and always get the same answer.

FWIW, I've tried adjusting the various flags (e.g., MAP_POPULATE) to make `bwa shm` behave more like #40. However, I was never able to get any improvements. I also tried running...

PS: I never answered some of the follow-up questions on this thread, so here it goes. I can confirm that the slower performance of `shm` is not resolved by doing...