Kyle Moad

OC doesn't have a filtering step. If there are lines missing it's a problem. Can you send us the problem lines and vcf headers? If it's helpful for data privacy,...

Try using the `--startat aggregator` option. It should resume and pick up the annotator outputs. But it has been buggy in the past.

This is likely a vcf parsing issue. Can you share a sample of the vcf that failed? Just the headers and a few lines would be fine. If you'd prefer...

Thanks for sending the vcf. We don't currently annotate structural variants. But are recognizing that this is an important issue, we will be adding structural variant annotations this year. We...

Thanks! I'm leaving this open as we work on structural.

This is certainly a bug of some kind. I couldn't reproduce it by simple running `install-base` on a fresh install though. What steps did you take before getting this error?...

The `btrfs` cli can be compiled from source if you're feeling brave ``` sudo dnf install -y \ git \ automake \ gcc \ python3-sphinx \ e2fsprogs-devel \ libuuid-devel \...

Hi cheanney, Apologies for the delay on our end for looking into this. Our opinion is that the call of Val2_Met119del is correct. chr16-11349332-CC-TT results in a start loss by...

Hi @cheanney We have an updated mapper with gencode 47 that's out now on run.opencravat.org. It does assign your variant to KRT86 Could you check it out and let us...

Gencode 47 mapper should be available to all oc users now. You can install it from the GUI by going to the update section of the store, or by running...