Giulio Ermanno Pibiri

Hello @maumueller, what do you mean by "hdf5 files that work on my setup" exactly? The above script "test.py" produces correct hdf5 files but, however, I was unable to figure...

Ah ok, that's actually what I did. Perhaps, you could consider to comment the code you reference above in the argument parser and just suggest predefined datasets if the use...

Hi there, could you provide a description of this feature, and of why this represents an "issue" for you? Thanks.

1. Ok, so what is that you required? 2. This is a good point. 3. To do so, external libraries have to use the indexes exposed by Tongrams. No need...

Hi, could you provide a better description of what exactly you need Tongrams to do? In this way, I can help you better with this problem.

If the libraries you want to use store their output in a (rather standard) Google-like format as the one illustrated in the README, then you can easily index their content...

Hi @marekkokot, I have the very same issue. No matter what combination of parameters I use, I always get a segfault. For example: ./kmc -v -fm -k31 -ci0 -m2 -t1...

Hi, I cloned the repo from here (Github) and then compiled it on my machine. Compilation works file. Here is the file attached (it is a tiny file). [ecoli1.fasta.gz](https://github.com/refresh-bio/KMC/files/7725842/ecoli1.fasta.gz)

These are my commands: ./kmc -v -fm -k31 -ci0 -t1 ecoli1.fasta ecoli1.kmc kmc_tmp_dir ./kmc -v -fm -k31 -ci0 -t1 @list.txt ecoli1.kmc kmc_tmp_dir/ where currently list.txt contains the filepath of just...

My running gcc on Ubuntu: gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) . I've also tried the release commit (b7de846829f7d8cfd18a3d1285deba6ee8ceffc2) but nothing changes. Of course, I have the tmp directory created.