jeremyButtler

This is a bit late, but for those coming to this repository later run. cd seq-align git pull git submodule update --init

Your code looks good. It is a basic Needleman and Smith Waterman alignment in python. To be honest, I think it is fine as is and I would not recomend...

First off thanks for your hard work Amanda. Having a program that does not do reference polishing can be really handy when your primers ended up sequencing a different subtype...