james hadfield

Hi @MichaelP93 - that visualisation indicates that traits have not been inferred for "Subtype" (as the internal branches are all grey). Could you post the `augur traits` command you are...

I _think_ that's trying to reconstruct the single trait "region country place_of_collection", rather than 3 independent traits. Can you try with: ```yaml params: columns = ["region", "country", "place_of_collection"] ``` and/or...

I think that's working as expected... If you want subtype (the colouring you are using in the screenshot) to be inferred across internal nodes then you need to add this...

> mugration: only one or zero states found -- this doesn't make any sense Trying to run `augur traits` where all tips have the same value isn't very informative and...

Thanks @ntaft ⭐️ Your mock looks along the right directions 👍 * Placement: It should be directly below the toggle for "Show confidence intervals" * Wording: It should read "Display...

There's a PR / branch-in-progress somewhere which allows one to add a node-attribute with an associated URL which you could then click on. Would this be similar to your thinking?

Sounds like a good feature, and easy to implement. I'd suggest a UI where we add a small copy icon next to the header text `Showing XX of YY genomes...

> I would expect the categories to be mutually exclusive, so G22200T would be just a reversion, not both a reversion and a homoplasy. I'm not really sure what homoplasy...

Auspice allows users to specify custom colour scales (colour schemes) and legend entries (which includes the bounds used to bin continuous scales). Not overly well documented - best place to...

P.S. What does "ENH" mean?