james hadfield

Results 362 comments of james hadfield

> I'm hoping for something leaner than a full headless Chrome browser There's nothing that I know of. We use(d) [puppeteer](https://github.com/puppeteer/puppeteer) for snapshot testing, but that's essentially a headless Chrome...

Thanks @cassiawag -- note that if you click “Zoom to selected” and then download the tree it works. My guess for the bug is that the tree-traversal used for export...

> Is there any way I can collect logs You could try having the browser console open and see if it prints any messages before/as it freezes, but from what...

Using Chrome 95.0.4638.54 on MacOS 11.5 with the sa-chile dataset and clicking around branches madly I... cannot reproduce this :(

@corneliusroemer -- following those steps (well, as well as I could, step 2 isn't applicable for zika) in brave 1.35.101 on MacOS 11.5 (M1 chip) I can't get it to...

Filtering will hide non-matching strains (the tree structure is still visible, but the branches are much thinner). If you set a colouring such as "my_strains" with values "yes" / "no",...

P.S. If you hover over the legend item the matching tips will expand in size. This isn't ideal for screenshots, but can be useful when exploring the data.

> it would be good to know which parts of Augur call this function `augur translate` parses GFF and GenBank files using [utils.load_features](https://github.com/nextstrain/augur/blob/master/augur/utils.py#L130), which relies on BCBio.GFF and Bio.SeqIO, respectively....

> I'd suggest perhaps rephrasing this slightly, and adding a link 👍 Another helpful improvement would be rendering the schemas as a documentation page in a format that's interpretable to...

Internally, date ranges and filters work differently, which is why this hasn't yet been implemented. [Filters](https://github.com/nextstrain/auspice/blob/master/src/actions/tree.js#L215-L280) are stored in a structure like `traitName = [{value: valueName, active: boolean})` whereas [selected...