James A. Overton

Hi @rrovetto. I think that the batch editing functionality you're requesting is quite different from existing Protege features, and I would be surprised if the team agree to add it....

@balhoff Are you still interested in implementing this command?

Yes, this is intended behaviour. Checking for a local catalogue file is cheap and fast, and matches Protege's behaviour. So ROBOT makes a guess and checks for local catalogs without...

@beckyjackson and I don't have access to Windows machines, but I'll ask her to take a look.

Ok, @matentzn can you please try under Windows, when you get a chance?

I think this is a good idea. All my new validation tools now include some way to either suggest or automatically apply fixes. My main suggestion is that I think...

Colours are certainly helpful. 1. ROBOT report outputs to files, not the terminal (although there is the `--print` option). 2. ROBOT sends all logs through the `slf4j` facade, implemented by...

I can't see where in https://github.com/ontodev/robot/blob/master/robot-core/src/main/java/org/obolibrary/robot/RepairOperation.java this is happening. I don't really like the literal with an `@` being reinterpreted as a language-tagged literal, but @cmungall designed `repair` to do...

@cmungall Is it intended behaviour for `repair` to change `a@b` to `a`? I'd also appreciate a pointer to where this happens, because I can't find it.

I gave a demo for the OBI developers today of a web interface for editing ontologies and ontology-driven datasets. It includes template editing (with validation), easy imports from large upstream...