Ino de Bruijn comments

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                                            Ino de Bruijn

Output file log inconsistency

@karthigayini Thanks for filing this! For the first two questions. Is this something you can help with @leexgh ? For the second part of the questions: 1. I believe you...

Output file log inconsistency

@karthigayini >WRT ONP: in the attached MAF file, ONP is marked for a variant with 3 Nucleotide change. Can I know why? Good catch. This looks like a bug actually....

missing dbSNP

duplicate of #539 ?

GENIE v9.6 data gets annotated with both approved and previous symbols

Same as https://github.com/genome-nexus/annotation-tools/issues/29

update the docker entrypoint for spring

@haynescd will look whether these changes are still necessary (lot of it has been updated in master now)

Sample Decryption and Redirects for Epic

@averyniceday just rebased it - i think fine to merge if the tests pass I added a follow up ticket about how to better handle custom MSK code as pointed...

Patientview timeline track labels need truncation and tooltips

@jCHENEBY will look at this CC @alisman

Add alphaMissense

superseded by https://github.com/cBioPortal/cbioportal-frontend/pull/5042

Remove possibility to create a Virtual Study by anonymous user

@forus this sounds like a good idea! Thanks for posting!

Add Chromoscope link to pancan_pcawg_2020

Thanks so much @michandreop ! To fix the commit history you can generally do something like: ``` # get the original clone (check if git remote -v is pointing to...