Pi π

I think that @cuongvng used the same parameters from the book for two pieces of training but got two different results (one good and one bad). Perhaps, he is mentioning...

* Plugins made easy with distributed computing. * Spreading ideas with distributed computing. * Let data speak with distributed computing. Perhaps, I haven't experienced all the features of ImJoy so...

Then with `pdb_id = "7d4i"`, I got this error: ``` KeyError Traceback (most recent call last) Cell In[10], line 26 23 json_dict["dialect"] = "alphafold3" 24 json_dict["version"] = 1 ---> 26...

This also happens with parseCIFHeader: ```python missing_residues = prody.parseCIFHeader(pdb_path, "unobserved") ``` Error: ``` KeyError Traceback (most recent call last) Cell In[11], line 27 24 json_dict["version"] = 1 26 # struct,...

I guess this will also occur for DNA/RNA that have unknown nucleotide: `DN`/`N`.

> > I guess this will also occur for DNA/RNA that have unknown nucleotide: `DN`/`N`. > > Can you check this please? Sorry I tested with unknown nucleotides of RNA,...

> I have now updated my branch with a new commit adding UNK to the AAMAP and now it seems to work again: > > ``` > In [1]: import...

> > > > I guess this will also occur for DNA/RNA that have unknown nucleotide: `DN`/`N`. > > > > > > > > > Can you check this...

Hi @jamesmkrieger, sorry for late reply, I was on vacation. Now it worked for all reported cases! I let the program run, if I found any more exceptions, I will...

Hi @jamesmkrieger , I found another problem for DNA in branch `temp4`: ```python pdb_id = "7ml4" chainID = "T" missing_residues = prody.parseCIFHeader(pdb_id, "unobserved") print(missing_residues[chainID]) """ Output: ['----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------------------------------------------------------------------------------------------------------------------------------', 'GATCCTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTTCCATAGCTTTTATATACGCGCCTTTTTTTTTT'] """ ```