MIScnn

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Update strategy of patch concat to consider all overlapping patches.

1

Deathlymad

IndexError when using the 60 sec example on a new dataset

8

Hi, I converted my dicom dataset to nifti files (images and segmentations), and I arranged the data in a folder like the kits19 example. But, when I try to use...

Itzikwa

When the tutorials will go to version 1.1

1

Very nice library, very easy to use. The tutorials are in version 0.34. You have an estimated date of when the tutorials will be on the version, n 1.1. Thank

mcastrorennes

Arrays type float64 after running subfunctions

2

Hi Dominik, I just noticed that both images and segmentations are of type float64 after running any subfunction. That might lead to memory issues during training and the batches take...

MLRadfys

PermissionError: [WinError 32]

1

Hi, I run as following part, and then I got error message: PermissionError: [WinError 32] The process cannot access the file because it is being used by another process: 'batches\\32891163.case_00010.pickle'...

deeplearining-sheen

2D slicer interface datasplit

1

Hi Dominik, hope you're well! Just one thing I've noticed with the 2D slicer interface. When you take the sample list and feed it to split_validation or cross_validation, the 2D...

MLRadfys

Soft or Hard ground-truth masks?

2

Dear MIScnn team, I was wondering: When training or testing a segmentation model: do you binarize the ground-truth masks, that have been transformed by preprocessing / data augmentation operations, just...

charleygros

Renamed function is not updated when imported

3

Hello @muellerdo , First of all, thank you for sharing your knowledge and your experience. I saw that this project is a modification of an older project you worked on....

UriShavit

Using trained weights for a new dataset

3

Hi Dr. Muller, I tried the kits19 notebook and it runs pretty well. But because of my (relatively) weak GPU I had to choose only several samples trained on limited...

Itzikwa

img_shape not updateded in sample object

2

Hi Dominik, I just noticed that the img_shape attribute is not updated in a sample object when for example using the resample subfunction. Is that on purposes in order to...

MLRadfys