Computational Epigenetics
Computational Epigenetics
atacseq_pipeline
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using...
open_pipelines
Pipelines for NGS data preprocessing by the Bock lab and friends
crop-seq
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
unsupervised_analysis
A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
enrichment_analysis
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.