Devon Ryan

Yes, the strand is taken into account, so please double check that when you manually generated 1-base BED file that you did in fact get the correct coordinates. You can...

Hmm, yeah, I'll have to think about how to change multiQC to handle that. I think I added a header line in recent deepTools versions, so maybe that's what can...

Thanks for the reminder. The galaxy deepTools instance no longer exists. I'll talk to the EU Galaxy team about making test data available there.

@bgruening Is there a good way to make test data available to all users on the EU Galaxy instance?

@bgruening I'll have to get back to you on the structure. If I still have VPN access I can look at what we used to have. Can regular users create...

@bgruening Is it possible to iterate over joint collections like this in Galaxy wrappers?

Doing this with plotHeatmap would be a bad idea, since the plots would incorrectly appear to be comparable. I would suggest creating separate heatmaps in that case.

Ah, gotcha. You should be able to select a collection as input for the score files in computeMatrix and get exactly that when you then run plotHeatmap on the output....

I'm back from vacation now so I'll hopefully have time to implement something like this in the near future.

@zfrenchee Sorry no, I've been busy with other things. I'm hoping to handle something in this regard for the 3.2 release, which has no ETA at this point.