dorianps

Sure, here it is. [PublishablePennModel.zip](https://github.com/dorianps/LINDA/files/2730867/PublishablePennModel.zip) This should be the file I used to create the model that currently comes with LINDA. It is simplistic and not well documented, that's why...

> Dorian, > > Thank you for your quick reply and for sending the script. I read your post and looked over the training script as well as the getLesionFeatures...

Ok, we can talk about the acute data when you have familiarity with these models. Good luck for now.

Hi Lorenzo, Honestly, I don't know where's it coming from, but I notice your R version is a bit old. ANTsR has kind of evolved without looking back. You can...

I will test it later. Can you tell me how it works before the error shows? I am trying to understand if this is happening early (which might be a...

@pinilorenzo I tested LINDA on two different systems, fresh/updated installs, and works fine on case `c0005s0007t01` of tha ATLAS dataset. Thus, I think it might be your specific case or...

@pinilorenzo , when you find the culprit, feel free to post it here and close this issue. My suspicion is still the T1w image or type of lesion you have....

The script published on the other issue is supposed to be a starting point, but you will need to understand a bit of R and the concepts behind it. At...

Check this updated file. I added some more comments to the code to help you. [PublishablePennModel_extraComments.zip](https://github.com/dorianps/LINDA/files/4737530/PublishablePennModel_extraComments.zip) `getLesionFeatures` is a function, and comes with Linda. You can copy it from the...

> Doria, > The first thing is to thank you for all the help you are giving me, thanks to you I have understood LINDA much better and I more...