dorianps

Jeff, I noticed you mention the package being on Cran but it doesn't seem listed in Cran. I was actually surprised that an ANTsR dependent package would be on Cran....

I have used MRtrix a few times, and used ANTs only for bias field correction, which is already implemented in their scripts. But motion correction requires that the software returns...

You can also try registerLesionToTemplate from the Lesymap package. That will perform brain extraction, denoising, etc., before running the registration. Looks like your original command has a single SyN deformation,...

Interesting challenge. I don't have a solution but I would think on how to create a mask of the presumed electrode (all the voxels that are touched by the virtual...

I think there are functions to convert world coordinates to voxel coordinates. How about you define a set of coordinates every e.g. 0.1mm, and map those back to voxels (assuming...

I was thinking the same solution Gabriel explained, register skull to skull (no brain) and bring a pre-existing ICV mask in native space. But was thinking a full syn registration...

If you want to map ICV you need to register skulls, it doesn't matter at all if the brain inside that skull was found perfectly. You can imagine what would...

Not sure if this helps, but I have used antsApplyTransformsToPoints in ANTsR. It takes a matrix Nx3 where N is the number of voxels, and gives the new coordinates. It...

The correlation itself doesn't mean much, it is the weights of each side combined with the correlation which tell the direction. This is an example how I think of it...

The same should be true with signed weights, right? The weight sign on each side combined with ccasummary should give the relationship bw a voxel on side A and a...