C. Titus Brown
C. Titus Brown
> * or maybe there's a fancy, quick kmer way to do this that would yield virtually the same info as mapping (e.g., "What proportion of kmers in the reads...
Some hot takes - > Why is it not possible to subtract signatures with different scales? As with most (all?) scaled sketch operations, the operations can only be done in...
also: deal with skip genomes stuff via manifests/picklists - ref #262
also: * provide suggestions for documentation & metadata for authors: * provide guidance on how to test your CLI plugin at the CLI (minimal testing regime: sourmash scripts, look for...
sourmash-mixers is now live on pypi: https://pypi.org/project/sourmash-mixers/0.2/ 🎉 There's a nice issue template on that repo that helps guide new plug-in development, too.
add a checklist for plugin deprecation, too? per https://github.com/sourmash-bio/sourmash/issues/3285
TODO: make setup instructions / files available somewhere!
# installation stuff/sourmash ``` conda config --add channels defaults conda config --add channels bioconda conda config --add channels conda-forge conda config --set channel_priority strict conda env create -n smash-foo -f...
thoughts for next year - - emphasize "coverage of metagenome by references" - ...and then provide alternative suggestions for what to do if coverage is poor :)
after discussion - pls update with similar info to https://github.com/sourmash-bio/sourmash/issues/3183#issuecomment-2362160753, and give me the path I should rsync in :)