schema_salad

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The spec describes three data types: [`SaladRecordSchema`](https://www.commonwl.org/v1.0/SchemaSalad.html#SaladRecordSchema), [`SaladEnumSchema`](https://www.commonwl.org/v1.0/SchemaSalad.html#SaladEnumSchema) and [`Documentation`](https://www.commonwl.org/v1.0/SchemaSalad.html#Documentation) in the section 4, 5 and 6, respectively. However, they are not referred by other sections and therefore it is...

tom-tan

RFE: fetch directly JSON from HDF5 files?

8

Would it be possible with slight changes in the resolving logic to support fetchers that produce YAML directly? What i have specifically in mind is to read HDF5 files, either...

ankostis

Can the parsers avoid building full URLs

2

Trying to parse the outputSource of a workflow: ```cwl outputs: - id: out type: File outputSource: hello/out ``` But the output source gets resolved to: ``` 'file:///Users/franklinmichael/source/janis-core/ingestion/workflow/hello_v1_0_0.cwl#hello/out/hello/out' ``` I don't...

illusional

codegen: CWL v1.x: workflow step "out" fields fail to parse if in long form

2

Using `docker_extract.py` from both [0.7](https://github.com/common-workflow-language/cwl-utils/releases/tag/0.7) and [0.8](https://github.com/common-workflow-language/cwl-utils/releases/tag/0.8) releases of cwl-utils in order to try prefetching singularity images from a workflow is raising a cryptic exception ``` docker_extract.py -s /tmp/sing_containers https://raw.githubusercontent.com/inab/Wetlab2Variations/eosc-life/cwl-workflows/workflows/workflow.cwl...

jmfernandez

Weird type value in CWL specification documentation

3

Type is `enum_d9cba076fca539106791a4f46d198c7fcfbdb779`, and should be `record` in CWL specification documentation. https://www.commonwl.org/v1.1.0-dev1/CommandLineTool.html#CommandInputRecordSchema

bogdang989

Add a possibility to specify default values for fields in schema salad

2

It would be interesting to be able to specify a default value for fields in schema_salad based specs. Currently they are mentioned in the documentation field, but this is not...

hmenager

CI failed: Inconsistent definition from schema_salad

1

# Background Travis CI is failing everyday. That is significant problem as an OSS. `.cwl` files in CWL repository **are invalid** as being validated by [schema_salad](https://github.com/common-workflow-language/schema_salad). This is because `schema_salad`...

otiai10

See discussion https://github.com/common-workflow-language/cwl-utils/issues/31#issuecomment-689012888

tetron

So that cwltool and other users can pre-cache popular schemas like schema.org, edamontology.org etc..

mr-c

I confirmed it with the commit 0fe8c66. # Input error.cwl: ```cwl #!/usr/bin/env cwl-runner cwlVersion: v1.0a class: CommandLineTool hints: - class: ResourceRequirement coresMin: 2 ramMin: 8 - class: DockerRequirementXX dockerPull: python:2-slim...

tom-tan