andrewjpage
andrewjpage
If your behind a proxy you may have to set the HTTPS_PROXY environment variable for it to work on the command line. To be honest @tseemann has better software to...
Brilliant thanks for the pointer. On 8 Jul 2017 9:45 am, "Torsten Seemann" wrote: > The .phy distance matrix is a standard format supported by quicktree, > phyml and others....
Dependancies are difficult to manage with pip, and I fear that having genometools as a dependancy might be a bridge too far.
Looks like KMC isn't properly installed. Try reinstalling the dependencies and running them (e.g. can you run kmc from the command line).
Hi Clabe, This is an example of the input file: https://raw.githubusercontent.com/sanger-pathogens/plasmidtron/master/plasmidtron/example_data/example_traits.csv It is a file of filenames. The most common input is Illumina paired end data, so there is 1...
Starting from a blank linuxbrew system, these are the commands I ran which got seroba running: ``` docker pull linuxbrew/linuxbrew docker run --rm -it linuxbrew/linuxbrew bash brew tap homebrew/science brew...
Ariba does the local assembly under the hood. The MPL environment stops matplotlib demanding you are running X. So only needed for headless servers. Andrew On 16 Sep 2017 2:03...