andrewjpage

Could you run 'roary -a' and send me the results?

What version of nucmer are you using? Could you send the results of ``` circlator progcheck ```

Grand, give me a toy example and I'll sort it out On 27 September 2017 at 08:53, Torsten Seemann wrote: > I second this suggestion. > > Either add a...

Its impossible to say really without seeing the file you are working with. I would make sure the are no frameshifts in the sequences.

I'd be interested to know as well.

Thanks for filing the python bug. This format is a royal pain in the modern age.

Hi Peter, A few months ago they blocked high level Taxa. They want you to use more specific taxa apparently. For completely new species theres a chicken and egg problem....

Hi Peter, I cant replicate your error from the latest version of the validator. Using the following EMBL file, it validates fine (without a strain/ environmental_sample, isolate). Might be another...

Heres the file (as a file). [example_embl.txt](https://github.com/sanger-pathogens/gff3toembl/files/621334/example_embl.txt) So the genus taxon 1279 (Staphylococcus) gets through the validator, but you'll get an email in a few days/weeks informing you that the...

Good luck with your submission!